When I build the logistic regression model utilizing glm() package, I have an original warning message:glm.fit: fitted probabilities numerically 0 or 1 occurred

One post on stack-overflow said I can use Firth"s diminished bias algorithm to settle this warning, yet then when I use logistf, the process appears to take also long so I have to terminate it. It might be as a result of me running a file set of 183,300 rows....

You are watching: Glm.fit: fitted probabilities numerically 0 or 1 occurred

How have the right to I strategy this issue?


I would imply providing glmnet a try- it introduces a regularization that can assist a bit and also need to be performant.

On the worry of 0/1 probabilities: it implies your trouble has actually separation or quasi-separation (a subset of the information that is predicted perfectly and may be running a subcollection of the coefficients out to infinity). That can cause difficulties, so you will want to look at the coefficients (specifically those that are big and have actually huge uncertainty intervals) and also at information via probcapability scores near zero or one (or link-scores through huge absolute values).

glmnet is not a drop-in replacement for stats::glm — it has actually its own debate structure (in specific, it does not take a data discussion, as the error above indicates). You have to make certain you’ve review the documentation, and also if that doesn’t completely make sense, you’ll most likely want to consult the main vignette included through the glmnet package.

jcblumThanks so much!

Do you occur to recognize wright here I deserve to find an excellent intro reresource to Time Series Analysis and also Forecasting in R?

Thanks again!


jcblumIs it a good book to purchase?There are lots of publications on Amazon and also this book is like 56$.I prefer to hold a book and also read rather of having actually a pdf file.

What do you think?

If you"re going to be forecasting in R, Rob J Hyndman is two-thumbs-up the way to go! I"m the exact same method around books, but you can sort of separation the distinction and also obtain the previously edition for ~$35 bucks (full disclosure, not certain just how a lot has changed). You deserve to additionally check out Hyndman"s blog short articles, notes, and so on many of which are linked via his amazon page: amazon.com

Sure point. I foracquired, he additionally has actually a course on datacamp, if you"re in the mood for somepoint interactive:


Forecasting Using R

Discover just how to make predictions about the future making use of time series forespreading in R.

See more: 500*.25 - Or, What Percent Is 25 Of 500

maraI am additionally taking a course on coursera.I think datacamp is sorta brand-new (I can be wrong) and I am not certain just how qualified the programs however I have been analysis tutorials on Datacamp because last December 2017. They are valuable yet sorta "quick to the suggest for END-USERS".To me, I am not going to learn as end-users prefer many organizations train students: here is the lm() package, plug in the data set, perform summary(), submit the report. Score!I hate that. You know what I mean?I want to end up being a true future information scientist that knows: Statistics, Applied Mathematics and Computer Science (ML, and so on.) which occur to be my 3 majors for currently.Just a brief intro about myself.